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TimeSerie with dolfin 1.60 and HDF5 1.10

0 votes

Hi,

I am using dolfin 1.6. 0 installed with macport 2.3.4 and hdf5 1.10 ( OS X El Capitan 10.11.5).

I have tested the example contained in undocumented/time-series/python, and the following error occurs for this command:

series.retrieve(mesh, 0.29)

HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0: #000:
H5Dio.c line 170 in H5Dread(): can't read data
major: Dataset
minor: Read failed #001: H5Dio.c line 418 in H5Dread(): unable to set up type info
major: Dataset
minor: Unable to initialize object #002: H5Dio.c line 953 in H5D
typeinfo_init(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0: #000: H5Dio.c line 170 in H5Dread(): can't
read data
major: Dataset
minor: Read failed #001: H5Dio.c line 418 in H5Dread(): unable to set up type info
major: Dataset
minor: Unable to initialize object #002: H5Dio.c line 953 in H5D
typeinfo_init(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0: #000: H5Dio.c line 170 in H5Dread(): can't
read data
major: Dataset
minor: Read failed #001: H5Dio.c line 418 in H5Dread(): unable to set up type info
major: Dataset
minor: Unable to initialize object #002: H5Dio.c line 953 in H5D
typeinfo_init(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type HDF5-DIAG: Error detected in HDF5 (1.10.0) MPI-process 0: #000: H5Dio.c line 170 in H5Dread(): can't
read data
major: Dataset
minor: Read failed #001: H5Dio.c line 418 in H5Dread(): unable to set up type info
major: Dataset
minor: Unable to initialize object #002: H5Dio.c line 953 in H5D
typeinfo_init(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type

Is there any problem to use dolfin 1.6.0 with hdf5 1.10.0 ?
I know I can use HDF5File instead TimeSeries, but I have a lot of old codes which contains TimeSeries functions

Thank you

asked Jun 22, 2016 by eliberge FEniCS Novice (190 points)
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