.. _demo_pde_iterative_stokes_python_documentation: Stokes equations with an iterative solver ========================================= This demo is implemented in a single Python file, :download:demo_stokes-iterative.py, which contains both the variational forms and the solver. This demo illustrates how to: * Read mesh and subdomains from file * Use mixed function spaces Equation and problem definition ------------------------------- Strong formulation ^^^^^^^^^^^^^^^^^^ .. math:: - \nabla \cdot (\nabla u + p I) &= f \quad {\rm in} \ \Omega, \\ \nabla \cdot u &= 0 \quad {\rm in} \ \Omega. \\ .. note:: The sign of the pressure has been flipped from the classical definition. This is done in order to have a symmetric (but not positive-definite) system of equations rather than a non-symmetric (but positive-definite) system of equations. A typical set of boundary conditions on the boundary :math:\partial \Omega = \Gamma_{D} \cup \Gamma_{N} can be: .. math:: u &= u_0 \quad {\rm on} \ \Gamma_{D}, \\ \nabla u \cdot n + p n &= g \, \quad\;\; {\rm on} \ \Gamma_{N}. \\ Weak formulation ^^^^^^^^^^^^^^^^ The Stokes equations can easily be formulated in a mixed variational form; that is, a form where the two variables, the velocity and the pressure, are approximated simultaneously. Using the abstract framework, we have the problem: find :math:(u, p) \in W such that .. math:: a((u, p), (v, q)) = L((v, q)) for all :math:(v, q) \in W, where .. math:: a((u, p), (v, q)) &= \int_{\Omega} \nabla u \cdot \nabla v - \nabla \cdot v \ p + \nabla \cdot u \ q \, {\rm d} x, \\ L((v, q)) &= \int_{\Omega} f \cdot v \, {\rm d} x + \int_{\partial \Omega_N} g \cdot v \, {\rm d} s. \\ The space :math:W should be a mixed (product) function space :math:W = V \times Q, such that :math:u \in V and :math:q \in Q. Domain and boundary conditions ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ In this demo, we shall consider the following definitions of the input functions, the domain, and the boundaries: * :math:\Omega = [0,1]\times[0,1] \backslash {\rm dolphin} (a unit cube) * :math:\Gamma_D = * :math:\Gamma_N = * :math:u_0 = (- \sin(\pi x_1), 0.0) for :math:x_0 = 1 and :math:u_0 = (0.0, 0.0) otherwise * :math:f = (0.0, 0.0) * :math:g = (0.0, 0.0) Implementation -------------- The Stokes equations as formulated above result in a system of linear equations that is not positive-definite. Standard iterative linear solvers typically fail to converge for such systems. Some care must therefore be taken in preconditioning the systems of equations. Moreover, not all of the linear algebra backends support this. We therefore start by checking that either "PETSc" or "Tpetra" (from Trilinos) is available. We also try to pick MINRES Krylov subspace method which is suitable for symmetric indefinite problems. If not available, costly QMR method is choosen. :: from dolfin import * # Test for PETSc or Tpetra if not has_linear_algebra_backend("PETSc") and not has_linear_algebra_backend("Tpetra"): info("DOLFIN has not been configured with Trilinos or PETSc. Exiting.") exit() if not has_krylov_solver_preconditioner("amg"): info("Sorry, this demo is only available when DOLFIN is compiled with AMG " "preconditioner, Hypre or ML.") exit() if has_krylov_solver_method("minres"): krylov_method = "minres" elif has_krylov_solver_method("tfqmr"): krylov_method = "tfqmr" else: info("Default linear algebra backend was not compiled with MINRES or TFQMR " "Krylov subspace method. Terminating.") exit() Next, we define the mesh (a :py:class:UnitCubeMesh ) and a mixed finite element TH. Then we build a :py:class:FunctionSpace  on this element. (This mixed finite element space is known as the Taylor--Hood elements and is a stable, standard element pair for the Stokes equations.) :: # Load mesh mesh = UnitCubeMesh.create(16, 16, 16, CellType.Type.hexahedron) # Build function space P2 = VectorElement("Lagrange", mesh.ufl_cell(), 2) P1 = FiniteElement("Lagrange", mesh.ufl_cell(), 1) TH = P2 * P1 W = FunctionSpace(mesh, TH) Next, we define the boundary conditions. :: # Boundaries def right(x, on_boundary): return x[0] > (1.0 - DOLFIN_EPS) def left(x, on_boundary): return x[0] < DOLFIN_EPS def top_bottom(x, on_boundary): return x[1] > 1.0 - DOLFIN_EPS or x[1] < DOLFIN_EPS # No-slip boundary condition for velocity noslip = Constant((0.0, 0.0, 0.0)) bc0 = DirichletBC(W.sub(0), noslip, top_bottom) # Inflow boundary condition for velocity inflow = Expression(("-sin(x[1]*pi)", "0.0", "0.0"), degree=2) bc1 = DirichletBC(W.sub(0), inflow, right) # Collect boundary conditions bcs = [bc0, bc1] The bilinear and linear forms corresponding to the weak mixed formulation of the Stokes equations are defined as follows: :: # Define variational problem (u, p) = TrialFunctions(W) (v, q) = TestFunctions(W) f = Constant((0.0, 0.0, 0.0)) a = inner(grad(u), grad(v))*dx + div(v)*p*dx + q*div(u)*dx L = inner(f, v)*dx We can now use the same :py:class:TrialFunctions  and :py:class:TestFunctions  to define the preconditioner matrix. We first define the form corresponding to the expression for the preconditioner (given in the initial description above): :: # Form for use in constructing preconditioner matrix b = inner(grad(u), grad(v))*dx + p*q*dx Next, we want to assemble the matrix corresponding to the bilinear form and the vector corresponding to the linear form of the Stokes equations. Moreover, we want to apply the specified boundary conditions to the linear system. However, :py:func:assembling  the matrix and vector and applying a :py:func:DirichletBC  separately will possibly result in a non-symmetric system of equations. Instead, we can use the :py:func:assemble_system  function to assemble both the matrix A, the vector bb, and apply the boundary conditions bcs in a symmetric fashion: :: # Assemble system A, bb = assemble_system(a, L, bcs) We do the same for the preconditioner matrix P using the linear form L as a dummy form: :: # Assemble preconditioner system P, btmp = assemble_system(b, L, bcs) Next, we specify the iterative solver we want to use, in this case a :py:class:KrylovSolver . We associate the left-hand side matrix A and the preconditioner matrix P with the solver by calling :py:func:solver.set_operators . :: # Create Krylov solver and AMG preconditioner solver = KrylovSolver(krylov_method, "amg") # Associate operator (A) and preconditioner matrix (P) solver.set_operators(A, P) We are now almost ready to solve the linear system of equations. It remains to specify a :py:class:Vector  for storing the result. For easy manipulation later, we can define a :py:class:Function  and use the vector associated with this Function. The call to :py:func:solver.solve  then looks as follows :: # Solve U = Function(W) solver.solve(U.vector(), bb) Finally, we can play with the result in different ways: :: # Get sub-functions u, p = U.split() # Save solution in VTK format ufile_pvd = File("velocity.pvd") ufile_pvd << u pfile_pvd = File("pressure.pvd") pfile_pvd << p