#include <PETScVector.h>

Inheritance diagram for dolfin::PETScVector:

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Collaboration diagram for dolfin::PETScVector:

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Public Member Functions
	PETScVector ()
	Create empty vector (on MPI_COMM_WORLD)

	PETScVector (MPI_Comm comm)
	Create empty vector on an MPI communicator.

	PETScVector (MPI_Comm comm, std::size_t N)
	Create vector of size N.

	PETScVector (const SparsityPattern &sparsity_pattern)
	Create vector.

	PETScVector (const PETScVector &x)
	Copy constructor.

	PETScVector (Vec x)

virtual	~PETScVector ()
	Destructor.

virtual void	zero ()
	Set all entries to zero and keep any sparse structure.

virtual void	apply (std::string mode)
	Finalize assembly of tensor.

virtual MPI_Comm	mpi_comm () const
	Return MPI communicator.

virtual std::string	str (bool verbose) const
	Return informal string representation (pretty-print)

virtual std::shared_ptr< GenericVector >	copy () const
	Return copy of vector.

virtual void	init (std::size_t N)
	Initialize vector to global size N.

virtual void	init (std::pair< std::size_t, std::size_t > range)
	Initialize vector with given ownership range.

virtual void	init (std::pair< std::size_t, std::size_t > range, const std::vector< std::size_t > &local_to_global_map, const std::vector< la_index > &ghost_indices)

virtual bool	empty () const
	Return true if vector is empty.

virtual std::size_t	size () const
	Return size of vector.

virtual std::size_t	local_size () const
	Return local size of vector.

virtual std::pair< std::int64_t, std::int64_t >	local_range () const
	Return ownership range of a vector.

virtual bool	owns_index (std::size_t i) const
	Determine whether global vector index is owned by this process.

virtual void	get (double block, std::size_t m, const dolfin::la_index rows) const

virtual void	get_local (double block, std::size_t m, const dolfin::la_index rows) const
	Get block of values using local indices.

virtual void	set (const double block, std::size_t m, const dolfin::la_index rows)
	Set block of values using global indices.

virtual void	set_local (const double block, std::size_t m, const dolfin::la_index rows)
	Set block of values using local indices.

virtual void	add (const double block, std::size_t m, const dolfin::la_index rows)
	Add block of values using global indices.

virtual void	add_local (const double block, std::size_t m, const dolfin::la_index rows)
	Add block of values using local indices.

virtual void	get_local (std::vector< double > &values) const
	Get all values on local process.

virtual void	set_local (const std::vector< double > &values)
	Set all values on local process.

virtual void	add_local (const Array< double > &values)
	Add values to each entry on local process.

virtual void	gather (GenericVector &y, const std::vector< dolfin::la_index > &indices) const

virtual void	gather (std::vector< double > &x, const std::vector< dolfin::la_index > &indices) const

virtual void	gather_on_zero (std::vector< double > &x) const

virtual void	axpy (double a, const GenericVector &x)
	Add multiple of given vector (AXPY operation)

virtual void	abs ()
	Replace all entries in the vector by their absolute values.

virtual double	inner (const GenericVector &v) const
	Return inner product with given vector.

virtual double	norm (std::string norm_type) const
	Return norm of vector.

virtual double	min () const
	Return minimum value of vector.

virtual double	max () const
	Return maximum value of vector.

virtual double	sum () const
	Return sum of values of vector.

virtual double	sum (const Array< std::size_t > &rows) const
	Return sum of selected rows in vector.

virtual const PETScVector &	operator*= (double a)
	Multiply vector by given number.

virtual const PETScVector &	operator*= (const GenericVector &x)
	Multiply vector by another vector pointwise.

virtual const PETScVector &	operator/= (double a)
	Divide vector by given number.

virtual const PETScVector &	operator+= (const GenericVector &x)
	Add given vector.

virtual const PETScVector &	operator+= (double a)
	Add number to all components of a vector.

virtual const PETScVector &	operator-= (const GenericVector &x)
	Subtract given vector.

virtual const PETScVector &	operator-= (double a)
	Subtract number from all components of a vector.

virtual const GenericVector &	operator= (const GenericVector &x)
	Assignment operator.

virtual const PETScVector &	operator= (double a)
	Assignment operator.

virtual void	update_ghost_values ()
	Update values shared from remote processes.

virtual GenericLinearAlgebraFactory &	factory () const
	Return linear algebra backend factory.

void	set_options_prefix (std::string options_prefix)

std::string	get_options_prefix () const

void	set_from_options ()

Vec	vec () const
	Return pointer to PETSc Vec object.

const PETScVector &	operator= (const PETScVector &x)
	Assignment operator.

void	reset (Vec vec)

Public Member Functions inherited from dolfin::GenericVector
virtual	~GenericVector ()
	Destructor.

virtual void	init (const TensorLayout &tensor_layout)

virtual std::size_t	rank () const
	Return tensor rank (number of dimensions)

virtual std::size_t	size (std::size_t dim) const
	Return size of given dimension.

virtual std::pair< std::int64_t, std::int64_t >	local_range (std::size_t dim) const
	Return local ownership range.

virtual void	get (double block, const dolfin::la_index num_rows, const dolfin::la_index const rows) const
	Get block of values using global indices.

virtual void	get_local (double block, const dolfin::la_index num_rows, const dolfin::la_index const rows) const
	Get block of values using local indices.

virtual void	set (const double block, const dolfin::la_index num_rows, const dolfin::la_index const rows)
	Set block of values using global indices.

virtual void	set_local (const double block, const dolfin::la_index num_rows, const dolfin::la_index const rows)
	Set block of values using local indices.

virtual void	add (const double block, const dolfin::la_index num_rows, const dolfin::la_index const rows)
	Add block of values using global indices.

virtual void	add_local (const double block, const dolfin::la_index num_rows, const dolfin::la_index const rows)
	Add block of values using local indices.

virtual void	add (const double *block, const std::vector< ArrayView< const dolfin::la_index >> &rows)
	Add block of values using global indices.

virtual void	add_local (const double *block, const std::vector< ArrayView< const dolfin::la_index >> &rows)
	Add block of values using local indices.

std::shared_ptr< GenericVector >	operator+ (const GenericVector &x)
	Sum two vectors (returns a new vector)

std::shared_ptr< GenericVector >	operator+ (double a)
	Add scalar to a vector (returns a new vector)

std::shared_ptr< GenericVector >	operator* (double a)
	Multiply vector by a scalar (returns a new vector)

virtual double	operator[] (dolfin::la_index i) const
	Get value of given entry.

virtual double	getitem (dolfin::la_index i) const
	Get value of given entry.

virtual void	setitem (dolfin::la_index i, double value)

Public Member Functions inherited from dolfin::GenericTensor
virtual	~GenericTensor ()
	Destructor.

Public Member Functions inherited from dolfin::LinearAlgebraObject
virtual const LinearAlgebraObject *	instance () const
	Return concrete instance / unwrap (const version)

virtual LinearAlgebraObject *	instance ()
	Return concrete instance / unwrap (non-const version)

virtual std::shared_ptr< const LinearAlgebraObject >	shared_instance () const
	Return concrete shared ptr instance / unwrap (const version)

virtual std::shared_ptr< LinearAlgebraObject >	shared_instance ()
	Return concrete shared ptr instance / unwrap (non-const version)

Public Member Functions inherited from dolfin::Variable
	Variable ()
	Create unnamed variable.

	Variable (const std::string name, const std::string label)
	Create variable with given name and label.

	Variable (const Variable &variable)
	Copy constructor.

virtual	~Variable ()
	Destructor.

const Variable &	operator= (const Variable &variable)
	Assignment operator.

void	rename (const std::string name, const std::string label)
	Rename variable.

std::string	name () const
	Return name.

std::string	label () const
	Return label (description)

std::size_t	id () const

Public Member Functions inherited from dolfin::PETScObject
	PETScObject ()
	Constructor. Ensures that PETSc has been initialised.

virtual	~PETScObject ()
	Destructor.

Additional Inherited Members
Static Public Member Functions inherited from dolfin::PETScObject
static void	petsc_error (int error_code, std::string filename, std::string petsc_function)
	Print error message for PETSc calls that return an error.

Public Attributes inherited from dolfin::Variable
Parameters	parameters
	Parameters.

Detailed Description

A simple vector class based on PETSc.

It is a simple wrapper for a PETSc vector pointer (Vec) implementing the GenericVector interface.

The interface is intentionally simple. For advanced usage, access the PETSc Vec pointer using the function vec() and use the standard PETSc interface.

Constructor & Destructor Documentation

PETScVector::PETScVector ( Vec x )

explicit

Create vector wrapper of PETSc Vec pointer. The reference counter of the Vec will be increased, and decreased upon destruction of this object.

Member Function Documentation

void PETScVector::gather	(	GenericVector &	y,
		const std::vector< dolfin::la_index > &	indices
	)		const

virtual

Gather entries (given by global indices) into local (MPI_COMM_SELF) vector x. Provided x must be empty or of correct dimension (same as provided indices). This operation is collective

Implements dolfin::GenericVector.

void PETScVector::gather	(	std::vector< double > &	x,
		const std::vector< dolfin::la_index > &	indices
	)		const

virtual

Gather entries (given by global indices) into x. This operation is collective

Implements dolfin::GenericVector.

void PETScVector::gather_on_zero ( std::vector< double > & x ) const

virtual

Gather all entries into x on process 0. This operation is collective

Implements dolfin::GenericVector.

void PETScVector::get	(	double *	block,
		std::size_t	m,
		const dolfin::la_index *	rows
	)		const

virtual

Get block of values using global indices (all values must be owned by local process, ghosts cannot be accessed)

Implements dolfin::GenericVector.

std::string PETScVector::get_options_prefix ( ) const

Returns the prefix used by PETSc when searching the options database

void PETScVector::init	(	std::pair< std::size_t, std::size_t >	range,
		const std::vector< std::size_t > &	local_to_global_map,
		const std::vector< la_index > &	ghost_indices
	)

virtual

Initialize vector with given ownership range and with ghost values

Implements dolfin::GenericVector.

void PETScVector::reset ( Vec vec )

Switch underlying PETSc object. Intended for internal library usage.

void PETScVector::set_from_options ( )

Call PETSc function VecSetFromOptions on the underlying Vec object

void PETScVector::set_options_prefix ( std::string options_prefix )

Sets the prefix used by PETSc when searching the options database

The documentation for this class was generated from the following files:

/home/fenics/shared/dolfin/la/PETScVector.h
/home/fenics/shared/dolfin/la/PETScVector.cpp

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation